IL_8WV1_205

3D structure

PDB id

8WV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.99 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

8WV1|1|A|G|848, 8WV1|1|A|G|852

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WV1_205 not in the Motif Atlas

Homologous match to IL_5J7L_260

Geometric discrepancy: 0.1757

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

8WV1|1|A|G|721
8WV1|1|A|A|722
8WV1|1|A|A|723
8WV1|1|A|A|724
8WV1|1|A|C|725
*
8WV1|1|A|G|846
8WV1|1|A|A|847
8WV1|1|A|G|848
8WV1|1|A|A|849
8WV1|1|A|U|850
8WV1|1|A|A|851
8WV1|1|A|G|852
8WV1|1|A|C|853

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain K

50S ribosomal protein L15