IL_8WV1_207

3D structure

PDB id

8WV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.99 Å

Loop

Sequence

GUUGG*CCAUC

Length

10 nucleotides

Bulged bases

8WV1|1|A|U|1107, 8WV1|1|A|C|1122

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WV1_207 not in the Motif Atlas

Homologous match to IL_9DFE_042

Geometric discrepancy: 0.3317

The information below is about IL_9DFE_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8WV1|1|A|G|1105
8WV1|1|A|U|1106
8WV1|1|A|U|1107
8WV1|1|A|G|1108
8WV1|1|A|G|1109
*
8WV1|1|A|C|1121
8WV1|1|A|C|1122
8WV1|1|A|A|1123
8WV1|1|A|U|1124
8WV1|1|A|C|1125

Current chains

Chain A

23S rRNA

Nearby chains

Chain L

50S ribosomal protein L16

Chain U

50S ribosomal protein L25