IL_8WV1_219

3D structure

PDB id

8WV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.99 Å

Loop

Sequence

GAAG*CC

Length

6 nucleotides

Bulged bases

8WV1|1|A|A|1878

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WV1_219 not in the Motif Atlas

Homologous match to IL_9DFE_073

Geometric discrepancy: 0.3556

The information below is about IL_9DFE_073

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_24264.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

7

Unit IDs

8WV1|1|A|G|1877
8WV1|1|A|A|1878
8WV1|1|A|A|1879
8WV1|1|A|G|1880
*
8WV1|1|A|C|1915
8WV1|1|A|C|1916

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain a

Large subunit ribosomal RNA; LSU rRNA