IL_8WV1_248

3D structure

PDB id

8WV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.99 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

8WV1|1|a|G|2588, 8WV1|1|a|A|2589

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WV1_248 not in the Motif Atlas

Homologous match to IL_5J7L_340

Geometric discrepancy: 0.1769

The information below is about IL_5J7L_340

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

8WV1|1|a|C|2522
8WV1|1|a|U|2523
8WV1|1|a|C|2524
*
8WV1|1|a|G|2586
8WV1|1|a|C|2587
8WV1|1|a|G|2588
8WV1|1|a|A|2589
8WV1|1|a|G|2590

Current chains

Chain a

23S rRNA

Nearby chains

Chain 5

50S ribosomal protein L32

Chain d

50S ribosomal protein L3