IL_8WV1_249
3D structure
- PDB id
- 8WV1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.99 Å
Loop
- Sequence
- UUUCC*GGUAG
- Length
- 10 nucleotides
- Bulged bases
- 8WV1|1|a|U|2701, 8WV1|1|a|C|2702
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8WV1_249 not in the Motif Atlas
- Homologous match to IL_9DFE_104
- Geometric discrepancy: 0.2123
- The information below is about IL_9DFE_104
- Detailed Annotation
- UAA/GAN related, with intercalation
- Broad Annotation
- UAA/GAN related, with intercalation
- Motif group
- IL_82016.1
- Basepair signature
- cWW-L-tHS-L-cWW
- Number of instances in this motif group
- 4
Unit IDs
8WV1|1|a|U|2699
8WV1|1|a|U|2700
8WV1|1|a|U|2701
8WV1|1|a|C|2702
8WV1|1|a|C|2703
*
8WV1|1|a|G|2731
8WV1|1|a|G|2732
8WV1|1|a|U|2733
8WV1|1|a|A|2734
8WV1|1|a|G|2735
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain d
- 50S ribosomal protein L3
- Chain m
- 50S ribosomal protein L17
- Chain o
- 50S ribosomal protein L19
Coloring options: