IL_8XSX_037

3D structure

PDB id

8XSX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA, SERBP1 and eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

8XSX|1|L5|G|748, 8XSX|1|L5|C|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XSX_037 not in the Motif Atlas

Geometric match to IL_5TBW_020

Geometric discrepancy: 0.1658

The information below is about IL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8XSX|1|L5|G|745
8XSX|1|L5|A|746
8XSX|1|L5|A|747
8XSX|1|L5|G|748
8XSX|1|L5|G|749
8XSX|1|L5|U|750
8XSX|1|L5|G|751
8XSX|1|L5|G|752
*
8XSX|1|L5|U|911
8XSX|1|L5|G|912
8XSX|1|L5|U|913
8XSX|1|L5|U|914
8XSX|1|L5|A|915
8XSX|1|L5|C|916
8XSX|1|L5|A|917
8XSX|1|L5|G|918
8XSX|1|L5|C|919

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LM

60S ribosomal protein L14

Chain LS

60S ribosomal protein L18a