IL_8XSX_134

3D structure

PDB id

8XSX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA, SERBP1 and eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CAG*CGUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XSX_134 not in the Motif Atlas

Homologous match to IL_5TBW_099

Geometric discrepancy: 0.177

The information below is about IL_5TBW_099

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_71241.2

Basepair signature

cWW-cWW-tSH-cWW-L-L

Number of instances in this motif group

7

Unit IDs

8XSX|1|L5|C|4243
8XSX|1|L5|A|4244
8XSX|1|L5|G|4245
*
8XSX|1|L5|C|4263
8XSX|1|L5|G|4264
8XSX|1|L5|U|4265
8XSX|1|L5|G|4266
8XSX|1|L5|G|4267

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L7

5S ribosomal RNA; 5S rRNA

Chain LD

60S ribosomal protein L5

Chain LJ

60S ribosomal protein L11

Chain LT

60S ribosomal protein L21