IL_8XSY_037

3D structure

PDB id

8XSY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, e-tRNA and CCDC124 (40S head Swivelled)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

8XSY|1|L5|G|748, 8XSY|1|L5|C|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XSY_037 not in the Motif Atlas

Geometric match to IL_5TBW_020

Geometric discrepancy: 0.1603

The information below is about IL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8XSY|1|L5|G|745
8XSY|1|L5|A|746
8XSY|1|L5|A|747
8XSY|1|L5|G|748
8XSY|1|L5|G|749
8XSY|1|L5|U|750
8XSY|1|L5|G|751
8XSY|1|L5|G|752
*
8XSY|1|L5|U|911
8XSY|1|L5|G|912
8XSY|1|L5|U|913
8XSY|1|L5|U|914
8XSY|1|L5|A|915
8XSY|1|L5|C|916
8XSY|1|L5|A|917
8XSY|1|L5|G|918
8XSY|1|L5|C|919

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LM

60S ribosomal protein L14

Chain LS

60S ribosomal protein L18a