IL_8XSY_084

3D structure

PDB id

8XSY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, e-tRNA and CCDC124 (40S head Swivelled)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UAUAGACAG*CCGAA

Length

14 nucleotides

Bulged bases

8XSY|1|L5|A|1960

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XSY_084 not in the Motif Atlas

Homologous match to IL_8C3A_057

Geometric discrepancy: 0.2903

The information below is about IL_8C3A_057

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90538.5

Basepair signature

cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L

Number of instances in this motif group

6

Unit IDs

8XSY|1|L5|U|1957
8XSY|1|L5|A|1958
8XSY|1|L5|U|1959
8XSY|1|L5|A|1960
8XSY|1|L5|G|1961
8XSY|1|L5|A|1962
8XSY|1|L5|C|1963
8XSY|1|L5|A|1964
8XSY|1|L5|G|1965
*
8XSY|1|L5|C|2022
8XSY|1|L5|C|2023
8XSY|1|L5|G|2024
8XSY|1|L5|A|2025
8XSY|1|L5|A|2026

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Lm

Ubiquitin-60S ribosomal protein L40

Chain Ls

Large ribosomal subunit protein uL10