IL_8XSZ_039

3D structure

PDB id

8XSZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA and P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

8XSZ|1|L5|G|748, 8XSZ|1|L5|C|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XSZ_039 not in the Motif Atlas

Geometric match to IL_5TBW_020

Geometric discrepancy: 0.1598

The information below is about IL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8XSZ|1|L5|G|745
8XSZ|1|L5|A|746
8XSZ|1|L5|A|747
8XSZ|1|L5|G|748
8XSZ|1|L5|G|749
8XSZ|1|L5|U|750
8XSZ|1|L5|G|751
8XSZ|1|L5|G|752
*
8XSZ|1|L5|U|911
8XSZ|1|L5|G|912
8XSZ|1|L5|U|913
8XSZ|1|L5|U|914
8XSZ|1|L5|A|915
8XSZ|1|L5|C|916
8XSZ|1|L5|A|917
8XSZ|1|L5|G|918
8XSZ|1|L5|C|919

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LM

60S ribosomal protein L14

Chain LS

60S ribosomal protein L18a