IL_8XSZ_087

3D structure

PDB id

8XSZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA and P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UAUAGACAG*CCGAA

Length

14 nucleotides

Bulged bases

8XSZ|1|L5|A|1960

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XSZ_087 not in the Motif Atlas

Homologous match to IL_8C3A_057

Geometric discrepancy: 0.2987

The information below is about IL_8C3A_057

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90538.5

Basepair signature

cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L

Number of instances in this motif group

6

Unit IDs

8XSZ|1|L5|U|1957
8XSZ|1|L5|A|1958
8XSZ|1|L5|U|1959
8XSZ|1|L5|A|1960
8XSZ|1|L5|G|1961
8XSZ|1|L5|A|1962
8XSZ|1|L5|C|1963
8XSZ|1|L5|A|1964
8XSZ|1|L5|G|1965
*
8XSZ|1|L5|C|2022
8XSZ|1|L5|C|2023
8XSZ|1|L5|G|2024
8XSZ|1|L5|A|2025
8XSZ|1|L5|A|2026

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Lm

Ubiquitin-60S ribosomal protein L40

Chain Ls

Large ribosomal subunit protein uL10