IL_8XSZ_096

3D structure

PDB id

8XSZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA and P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XSZ_096 not in the Motif Atlas

Homologous match to IL_5TBW_061

Geometric discrepancy: 0.0797

The information below is about IL_5TBW_061

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

8XSZ|1|L5|G|2358
8XSZ|1|L5|U|2359
8XSZ|1|L5|A|2360
8XSZ|1|L5|G|2361
8XSZ|1|L5|U|2362
8XSZ|1|L5|A|2363
8XSZ|1|L5|G|2364
*
8XSZ|1|L5|C|3858
8XSZ|1|L5|G|3859
8XSZ|1|L5|A|3860
8XSZ|1|L5|A|3861
8XSZ|1|L5|A|3862
8XSZ|1|L5|C|3863

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LP

60S ribosomal protein L17