IL_8XSZ_102

3D structure

PDB id

8XSZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA and P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAGUGG*CGC

Length

9 nucleotides

Bulged bases

8XSZ|1|L5|G|2546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XSZ_102 not in the Motif Atlas

Geometric match to IL_5J7L_282

Geometric discrepancy: 0.2178

The information below is about IL_5J7L_282

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

8XSZ|1|L5|G|2542
8XSZ|1|L5|A|2543
8XSZ|1|L5|G|2544
8XSZ|1|L5|U|2545
8XSZ|1|L5|G|2546
8XSZ|1|L5|G|2547
*
8XSZ|1|L5|C|2772
8XSZ|1|L5|G|2773
8XSZ|1|L5|C|2774

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain Lk

60S ribosomal protein L38