IL_8XSZ_123

3D structure

PDB id

8XSZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA and P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UG*UAAA

Length

6 nucleotides

Bulged bases

8XSZ|1|L5|A|3746, 8XSZ|1|L5|A|3747

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XSZ_123 not in the Motif Atlas

Homologous match to IL_5TBW_085

Geometric discrepancy: 0.0886

The information below is about IL_5TBW_085

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

8XSZ|1|L5|U|3704
8XSZ|1|L5|G|3705
*
8XSZ|1|L5|U|3745
8XSZ|1|L5|A|3746
8XSZ|1|L5|A|3747
8XSZ|1|L5|A|3748

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain S2

Small subunit ribosomal RNA; SSU rRNA