IL_8XSZ_154
3D structure
- PDB id
- 8XSZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA and P-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CUCAGUAC*GGAACCG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8XSZ_154 not in the Motif Atlas
- Geometric match to IL_5TBW_116
- Geometric discrepancy: 0.1007
- The information below is about IL_5TBW_116
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
8XSZ|1|L5|C|4596
8XSZ|1|L5|U|4597
8XSZ|1|L5|C|4598
8XSZ|1|L5|A|4599
8XSZ|1|L5|G|4600
8XSZ|1|L5|U|4601
8XSZ|1|L5|A|4602
8XSZ|1|L5|C|4603
*
8XSZ|1|L5|G|4608
8XSZ|1|L5|G|4609
8XSZ|1|L5|A|4610
8XSZ|1|L5|A|4611
8XSZ|1|L5|C|4612
8XSZ|1|L5|C|4613
8XSZ|1|L5|G|4614
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LB
- 60S ribosomal protein L3
- Chain LH
- 60S ribosomal protein L9
- Chain LV
- 60S ribosomal protein L23
- Chain Lm
- Ubiquitin-60S ribosomal protein L40
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