IL_8XSZ_155
3D structure
- PDB id
- 8XSZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA and P-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- ACAUUU*ACCAU
- Length
- 11 nucleotides
- Bulged bases
- 8XSZ|1|L5|C|4670
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8XSZ_155 not in the Motif Atlas
- Homologous match to IL_8GLP_317
- Geometric discrepancy: 0.282
- The information below is about IL_8GLP_317
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_31690.2
- Basepair signature
- cWW-L-cWW-L-cWW-L
- Number of instances in this motif group
- 7
Unit IDs
8XSZ|1|L5|A|4624
8XSZ|1|L5|C|4625
8XSZ|1|L5|A|4626
8XSZ|1|L5|U|4627
8XSZ|1|L5|U|4628
8XSZ|1|L5|U|4629
*
8XSZ|1|L5|A|4669
8XSZ|1|L5|C|4670
8XSZ|1|L5|C|4671
8XSZ|1|L5|A|4672
8XSZ|1|L5|U|4673
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LB
- 60S ribosomal protein L3
- Chain LV
- 60S ribosomal protein L23
- Chain LW
- 60S ribosomal protein L24
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