IL_8XSZ_178
3D structure
- PDB id
- 8XSZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA and P-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GAACGCG*CUAAGC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8XSZ_178 not in the Motif Atlas
- Homologous match to IL_8C3A_144
- Geometric discrepancy: 0.115
- The information below is about IL_8C3A_144
- Detailed Annotation
- Minor groove platform related
- Broad Annotation
- No text annotation
- Motif group
- IL_45841.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
8XSZ|1|L7|G|21
8XSZ|1|L7|A|22
8XSZ|1|L7|A|23
8XSZ|1|L7|C|24
8XSZ|1|L7|G|25
8XSZ|1|L7|C|26
8XSZ|1|L7|G|27
*
8XSZ|1|L7|C|52
8XSZ|1|L7|U|53
8XSZ|1|L7|A|54
8XSZ|1|L7|A|55
8XSZ|1|L7|G|56
8XSZ|1|L7|C|57
Current chains
- Chain L7
- 5S rRNA
Nearby chains
- Chain LD
- 60S ribosomal protein L5
- Chain LJ
- 60S ribosomal protein L11
Coloring options: