IL_8XSZ_201

3D structure

PDB id

8XSZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA and P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAUU*ACCUCGGG

Length

12 nucleotides

Bulged bases

8XSZ|1|S2|U|305, 8XSZ|1|S2|G|307

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XSZ_201 not in the Motif Atlas

Geometric match to IL_1GID_008

Geometric discrepancy: 0.3713

The information below is about IL_1GID_008

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

8XSZ|1|S2|C|216
8XSZ|1|S2|A|217
8XSZ|1|S2|U|218
8XSZ|1|S2|U|219
*
8XSZ|1|S2|A|302
8XSZ|1|S2|C|303
8XSZ|1|S2|C|304
8XSZ|1|S2|U|305
8XSZ|1|S2|C|306
8XSZ|1|S2|G|307
8XSZ|1|S2|G|308
8XSZ|1|S2|G|309

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4, X isoform

Chain SI

40S ribosomal protein S8