IL_8XSZ_241
3D structure
- PDB id
- 8XSZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA and P-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GGAGUAUG*UGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8XSZ_241 not in the Motif Atlas
- Homologous match to IL_8C3A_446
- Geometric discrepancy: 0.0667
- The information below is about IL_8C3A_446
- Detailed Annotation
- 8x6 Sarcin-Ricin with inserted Y; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_41756.2
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
8XSZ|1|S2|G|1168
8XSZ|1|S2|G|1169
8XSZ|1|S2|A|1170
8XSZ|1|S2|G|1171
8XSZ|1|S2|U|1172
8XSZ|1|S2|A|1173
8XSZ|1|S2|U|1174
8XSZ|1|S2|G|1175
*
8XSZ|1|S2|U|1186
8XSZ|1|S2|G|1187
8XSZ|1|S2|A|1188
8XSZ|1|S2|A|1189
8XSZ|1|S2|A|1190
8XSZ|1|S2|C|1191
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain Ln
- 60S ribosomal protein L41
- Chain SX
- 40S ribosomal protein S23
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