IL_8XT0_052
3D structure
- PDB id
- 8XT0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 55S mitoribosome with 5um Tigecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CCUAC*GCG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8XT0_052 not in the Motif Atlas
- Geometric match to IL_5B2P_003
- Geometric discrepancy: 0.1705
- The information below is about IL_5B2P_003
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_63596.12
- Basepair signature
- cWW-cWS-cSH-tWH-cWW-L
- Number of instances in this motif group
- 22
Unit IDs
8XT0|1|L1|C|1478
8XT0|1|L1|C|1479
8XT0|1|L1|U|1480
8XT0|1|L1|A|1481
8XT0|1|L1|C|1482
*
8XT0|1|L1|G|1491
8XT0|1|L1|C|1492
8XT0|1|L1|G|1493
Current chains
- Chain L1
- 16s rRNA
Nearby chains
- Chain LC
- Large ribosomal subunit protein uL3m
- Chain LN
- Large ribosomal subunit protein uL14m
- Chain LQ
- Large ribosomal subunit protein bL17m
- Chain LS
- Large ribosomal subunit protein bL19m
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