IL_8XT2_003
3D structure
- PDB id
- 8XT2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 55S mitoribosome with 10uM Tigecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CCU*AUG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8XT2_003 not in the Motif Atlas
- Geometric match to IL_5J7L_257
- Geometric discrepancy: 0.0841
- The information below is about IL_5J7L_257
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_07785.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 33
Unit IDs
8XT2|1|L1|C|175
8XT2|1|L1|C|176
8XT2|1|L1|U|177
*
8XT2|1|L1|A|186
8XT2|1|L1|U|187
8XT2|1|L1|G|188
Current chains
- Chain L1
- 16s rRNA
Nearby chains
- Chain LD
- Large ribosomal subunit protein uL4m
- Chain LO
- Large ribosomal subunit protein uL15m
- Chain LT
- Large ribosomal subunit protein bL20m
- Chain LU
- Large ribosomal subunit protein bL21m
- Chain Lf
- Large ribosomal subunit protein bL32m
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