IL_8XT2_015
3D structure
- PDB id
- 8XT2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 55S mitoribosome with 10uM Tigecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GAG*CC
- Length
- 5 nucleotides
- Bulged bases
- 8XT2|1|L1|A|476
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8XT2_015 not in the Motif Atlas
- Homologous match to IL_5J7L_276
- Geometric discrepancy: 0.1838
- The information below is about IL_5J7L_276
- Detailed Annotation
- Single bulged C
- Broad Annotation
- No text annotation
- Motif group
- IL_61258.15
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 41
Unit IDs
8XT2|1|L1|G|475
8XT2|1|L1|A|476
8XT2|1|L1|G|477
*
8XT2|1|L1|C|584
8XT2|1|L1|C|585
Current chains
- Chain L1
- 16s rRNA
Nearby chains
- Chain LT
- Large ribosomal subunit protein bL20m
- Chain LU
- Large ribosomal subunit protein bL21m
- Chain LV
- 39S ribosomal protein L22, mitochondrial
- Chain Ld
- Large ribosomal subunit protein uL30m
- Chain Lq
- Large ribosomal subunit protein mL43
- Chain Lz
- 39S ribosomal protein L52, mitochondrial
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