IL_8XT3_047

3D structure

PDB id

8XT3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 39S mitoribosome with 10uM Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCC*GAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XT3_047 not in the Motif Atlas

Geometric match to IL_2ZNI_001

Geometric discrepancy: 0.1093

The information below is about IL_2ZNI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

8XT3|1|L1|U|1445
8XT3|1|L1|C|1446
8XT3|1|L1|C|1447
*
8XT3|1|L1|G|1469
8XT3|1|L1|A|1470
8XT3|1|L1|A|1471

Current chains

Chain L1

16s rRNA

Nearby chains

Chain LC

Large ribosomal subunit protein uL3m

Chain LN

Large ribosomal subunit protein uL14m