IL_8XT3_049

3D structure

PDB id

8XT3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 39S mitoribosome with 10uM Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCUAC*GCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XT3_049 not in the Motif Atlas

Geometric match to IL_7RQB_104

Geometric discrepancy: 0.179

The information below is about IL_7RQB_104

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.6

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

14

Unit IDs

8XT3|1|L1|C|1478
8XT3|1|L1|C|1479
8XT3|1|L1|U|1480
8XT3|1|L1|A|1481
8XT3|1|L1|C|1482
*
8XT3|1|L1|G|1491
8XT3|1|L1|C|1492
8XT3|1|L1|G|1493

Current chains

Chain L1

16s rRNA

Nearby chains

Chain LC

Large ribosomal subunit protein uL3m

Chain LN

Large ribosomal subunit protein uL14m

Chain LS

Large ribosomal subunit protein bL19m