IL_8XU8_017

3D structure

PDB id

8XU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UAUCAA*UUUCAACG

Length

14 nucleotides

Bulged bases

8XU8|1|2|U|313, 8XU8|1|2|C|351

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XU8_017 not in the Motif Atlas

Homologous match to IL_8C3A_410

Geometric discrepancy: 0.1444

The information below is about IL_8C3A_410

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.1

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

6

Unit IDs

8XU8|1|2|U|311
8XU8|1|2|A|312
8XU8|1|2|U|313
8XU8|1|2|C|314
8XU8|1|2|A|315
8XU8|1|2|A|316
*
8XU8|1|2|U|348
8XU8|1|2|U|349
8XU8|1|2|U|350
8XU8|1|2|C|351
8XU8|1|2|A|352
8XU8|1|2|A|353
8XU8|1|2|C|354
8XU8|1|2|G|355

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SV

Small ribosomal subunit protein eS8A

Chain SX

Small ribosomal subunit protein uS17A

Chain Sc

Small ribosomal subunit protein uS12A