IL_8XU8_067

3D structure

PDB id

8XU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUAC*GAG

Length

7 nucleotides

Bulged bases

8XU8|1|2|U|1340

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XU8_067 not in the Motif Atlas

Homologous match to IL_8P9A_444

Geometric discrepancy: 0.2316

The information below is about IL_8P9A_444

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

8XU8|1|2|C|1339
8XU8|1|2|U|1340
8XU8|1|2|A|1341
8XU8|1|2|C|1342
*
8XU8|1|2|G|1383
8XU8|1|2|A|1384
8XU8|1|2|G|1385

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SF

Small ribosomal subunit protein uS9A

Chain SG

Small ribosomal subunit protein eS17A

Chain SJ

Small ribosomal subunit protein uS10

Chain SO

Small ribosomal subunit protein RACK1