IL_8XU8_073
3D structure
- PDB id
- 8XU8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GUCUAAC*GUAAUC
- Length
- 13 nucleotides
- Bulged bases
- 8XU8|1|2|C|1490, 8XU8|1|2|A|1516, 8XU8|1|2|U|1517
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8XU8_073 not in the Motif Atlas
- Homologous match to IL_8P9A_449
- Geometric discrepancy: 0.5287
- The information below is about IL_8P9A_449
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_22564.1
- Basepair signature
- cWW-L-R-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8XU8|1|2|G|1488
8XU8|1|2|U|1489
8XU8|1|2|C|1490
8XU8|1|2|U|1491
8XU8|1|2|A|1492
8XU8|1|2|A|1493
8XU8|1|2|C|1494
*
8XU8|1|2|G|1513
8XU8|1|2|U|1514
8XU8|1|2|A|1515
8XU8|1|2|A|1516
8XU8|1|2|U|1517
8XU8|1|2|C|1518
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain SA
- Small ribosomal subunit protein uS3
- Chain SI
- Small ribosomal subunit protein eS19A
- Chain SJ
- Small ribosomal subunit protein uS10
- Chain SM
- Small ribosomal subunit protein uS14A
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