IL_8XU8_220

3D structure

PDB id

8XU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUA*UUAAGC

Length

9 nucleotides

Bulged bases

8XU8|1|A|G|3377

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XU8_220 not in the Motif Atlas

Homologous match to IL_8C3A_138

Geometric discrepancy: 0.135

The information below is about IL_8C3A_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84428.1

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

8XU8|1|A|G|3328
8XU8|1|A|U|3329
8XU8|1|A|A|3330
*
8XU8|1|A|U|3373
8XU8|1|A|U|3374
8XU8|1|A|A|3375
8XU8|1|A|A|3376
8XU8|1|A|G|3377
8XU8|1|A|C|3378

Current chains

Chain A

25S rRNA

Nearby chains

Chain E

Large ribosomal subunit protein uL3

Chain Y

Large ribosomal subunit protein eL24A

Chain f

Large ribosomal subunit protein eL31A