IL_8XXL_029

3D structure

PDB id

8XXL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 40S ribosome with PDCD4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAAU*AAUUG

Length

9 nucleotides

Bulged bases

8XXL|1|S2|U|556

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XXL_029 not in the Motif Atlas

Geometric match to IL_4V88_430

Geometric discrepancy: 0.2773

The information below is about IL_4V88_430

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

8XXL|1|S2|C|527
8XXL|1|S2|A|528
8XXL|1|S2|A|529
8XXL|1|S2|U|530
*
8XXL|1|S2|A|554
8XXL|1|S2|A|555
8XXL|1|S2|U|556
8XXL|1|S2|U|557
8XXL|1|S2|G|558

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SJ

40S ribosomal protein S9

Chain Se

40S ribosomal protein S30