IL_8XXL_035
3D structure
- PDB id
- 8XXL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 40S ribosome with PDCD4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUUC
- Length
- 16 nucleotides
- Bulged bases
- 8XXL|1|S2|A|628, 8XXL|1|S2|U|630, 8XXL|1|S2|U|631
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8XXL_035 not in the Motif Atlas
- Homologous match to IL_4V88_415
- Geometric discrepancy: 0.1052
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
8XXL|1|S2|G|611
8XXL|1|S2|U|612
8XXL|1|S2|G|613
8XXL|1|S2|C|614
8XXL|1|S2|C|615
8XXL|1|S2|A|616
8XXL|1|S2|G|617
*
8XXL|1|S2|C|624
8XXL|1|S2|G|625
8XXL|1|S2|G|626
8XXL|1|S2|U|627
8XXL|1|S2|A|628
8XXL|1|S2|A|629
8XXL|1|S2|U|630
8XXL|1|S2|U|631
8XXL|1|S2|C|632
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain CD
- Programmed cell death protein 4
- Chain SD
- 40S ribosomal protein S3
- Chain SX
- 40S ribosomal protein S23
- Chain Se
- 40S ribosomal protein S30
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