IL_8XXM_106

3D structure

PDB id

8XXM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 40S ribosome with PDCD4 and eIF3G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUUUA*UUGAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XXM_106 not in the Motif Atlas

Geometric match to IL_5BTM_001

Geometric discrepancy: 0.2917

The information below is about IL_5BTM_001

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71154.1

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

10

Unit IDs

8XXM|1|S2|G|1727
8XXM|1|S2|U|1728
8XXM|1|S2|U|1729
8XXM|1|S2|U|1730
8XXM|1|S2|A|1731
*
8XXM|1|S2|U|1803
8XXM|1|S2|U|1804
8XXM|1|S2|G|1805
8XXM|1|S2|A|1806
8XXM|1|S2|C|1807

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SI

40S ribosomal protein S8