IL_8XXM_107

3D structure

PDB id

8XXM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 40S ribosome with PDCD4 and eIF3G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

ACAGGA*UU

Length

8 nucleotides

Bulged bases

8XXM|1|S2|G|1285, 8XXM|1|S2|G|1286

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8XXM_107 not in the Motif Atlas

Geometric match to IL_8P9A_236

Geometric discrepancy: 0.3995

The information below is about IL_8P9A_236

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10396.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

8XXM|1|S2|A|1282
8XXM|1|S2|C|1283
8XXM|1|S2|A|1284
8XXM|1|S2|G|1285
8XXM|1|S2|G|1286
8XXM|1|S2|A|1287
*
8XXM|1|S2|U|1314
8XXM|1|S2|U|1315

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SK

40S ribosomal protein S10

Chain SM

40S ribosomal protein S12

Chain Sf

Ubiquitin-40S ribosomal protein S27a