IL_8XXN_103
3D structure
- PDB id
- 8XXN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 43S ribosome with PDCD4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UGCAUGG*UCUGUGAUG
- Length
- 16 nucleotides
- Bulged bases
- 8XXN|1|S2|C|1331, 8XXN|1|S2|U|1494, 8XXN|1|S2|G|1497
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8XXN_103 not in the Motif Atlas
- Homologous match to IL_8P9A_439
- Geometric discrepancy: 0.1103
- The information below is about IL_8P9A_439
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_99893.1
- Basepair signature
- cWW-tHS-tWH-cWH-cWW-L-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8XXN|1|S2|U|1329
8XXN|1|S2|G|1330
8XXN|1|S2|C|1331
8XXN|1|S2|A|1332
8XXN|1|S2|U|1333
8XXN|1|S2|G|1334
8XXN|1|S2|G|1335
*
8XXN|1|S2|U|1492
8XXN|1|S2|C|1493
8XXN|1|S2|U|1494
8XXN|1|S2|G|1495
8XXN|1|S2|U|1496
8XXN|1|S2|G|1497
8XXN|1|S2|A|1498
8XXN|1|S2|U|1499
8XXN|1|S2|G|1500
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain CD
- Programmed cell death protein 4
- Chain SD
- 40S ribosomal protein S3
- Chain SK
- 40S ribosomal protein S10
- Chain SU
- 40S ribosomal protein S20
- Chain Sd
- 40S ribosomal protein S29
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