IL_8Y0U_006
3D structure
- PDB id
- 8Y0U (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- dormant ribosome with STM1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.59 Å
Loop
- Sequence
- CUUAGUAA*UGAAGCG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8Y0U_006 not in the Motif Atlas
- Homologous match to IL_5TBW_006
- Geometric discrepancy: 0.1258
- The information below is about IL_5TBW_006
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_88613.1
- Basepair signature
- cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
8Y0U|1|C1|C|82
8Y0U|1|C1|U|83
8Y0U|1|C1|U|84
8Y0U|1|C1|A|85
8Y0U|1|C1|G|86
8Y0U|1|C1|U|87
8Y0U|1|C1|A|88
8Y0U|1|C1|A|89
*
8Y0U|1|C1|U|97
8Y0U|1|C1|G|98
8Y0U|1|C1|A|99
8Y0U|1|C1|A|100
8Y0U|1|C1|G|101
8Y0U|1|C1|C|102
8Y0U|1|C1|G|103
Current chains
- Chain C1
- 25S rRNA
Nearby chains
- Chain LL
- Large ribosomal subunit protein eL13A
- Chain LN
- Large ribosomal subunit protein eL15A
- Chain LQ
- Large ribosomal subunit protein eL18A
- Chain La
- Large ribosomal subunit protein uL15
- Chain Lo
- Large ribosomal subunit protein eL42A
Coloring options: