IL_8Y0U_020

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

GAAUGUAG*UAUUAUAGC

Length

17 nucleotides

Bulged bases

8Y0U|1|C1|U|534, 8Y0U|1|C1|U|558

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y0U_020 not in the Motif Atlas

Homologous match to IL_5TBW_020

Geometric discrepancy: 0.1113

The information below is about IL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8Y0U|1|C1|G|531
8Y0U|1|C1|A|532
8Y0U|1|C1|A|533
8Y0U|1|C1|U|534
8Y0U|1|C1|G|535
8Y0U|1|C1|U|536
8Y0U|1|C1|A|537
8Y0U|1|C1|G|538
*
8Y0U|1|C1|U|553
8Y0U|1|C1|A|554
8Y0U|1|C1|U|555
8Y0U|1|C1|U|556
8Y0U|1|C1|A|557
8Y0U|1|C1|U|558
8Y0U|1|C1|A|559
8Y0U|1|C1|G|560
8Y0U|1|C1|C|561

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LM

Large ribosomal subunit protein eL14A

Chain LS

Large ribosomal subunit protein eL20A