IL_8Y0U_044

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

GUUCCG*UGAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y0U_044 not in the Motif Atlas

Homologous match to IL_5TBW_043

Geometric discrepancy: 0.2825

The information below is about IL_5TBW_043

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_71110.1

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

10

Unit IDs

8Y0U|1|C1|G|1013
8Y0U|1|C1|U|1014
8Y0U|1|C1|U|1015
8Y0U|1|C1|C|1016
8Y0U|1|C1|C|1017
8Y0U|1|C1|G|1018
*
8Y0U|1|C1|U|1034
8Y0U|1|C1|G|1035
8Y0U|1|C1|A|1036
8Y0U|1|C1|C|1037

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LJ

Large ribosomal subunit protein uL5B

Chain s

Suppressor protein STM1