IL_8Y0U_056

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

GUGGC*GAAUC

Length

10 nucleotides

Bulged bases

8Y0U|1|C1|G|1236

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y0U_056 not in the Motif Atlas

Homologous match to IL_8P9A_283

Geometric discrepancy: 0.4815

The information below is about IL_8P9A_283

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_16218.2

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

3

Unit IDs

8Y0U|1|C1|G|1234
8Y0U|1|C1|U|1235
8Y0U|1|C1|G|1236
8Y0U|1|C1|G|1237
8Y0U|1|C1|C|1238
*
8Y0U|1|C1|G|1250
8Y0U|1|C1|A|1251
8Y0U|1|C1|A|1252
8Y0U|1|C1|U|1253
8Y0U|1|C1|C|1254

Current chains

Chain C1

25S rRNA

Nearby chains

Chain P2

Large ribosomal subunit protein uL11A