IL_8Y0U_062

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

GUAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y0U_062 not in the Motif Atlas

Homologous match to IL_5TBW_061

Geometric discrepancy: 0.1004

The information below is about IL_5TBW_061

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

8Y0U|1|C1|G|1444
8Y0U|1|C1|U|1445
8Y0U|1|C1|A|1446
8Y0U|1|C1|G|1447
8Y0U|1|C1|U|1448
8Y0U|1|C1|A|1449
8Y0U|1|C1|G|1450
*
8Y0U|1|C1|C|2354
8Y0U|1|C1|G|2355
8Y0U|1|C1|A|2356
8Y0U|1|C1|A|2357
8Y0U|1|C1|A|2358
8Y0U|1|C1|C|2359

Current chains

Chain C1

25S rRNA

Nearby chains

Chain C3

5.8S ribosomal RNA; 5.8S rRNA

Chain LC

Large ribosomal subunit protein uL4A

Chain LP

Large ribosomal subunit protein uL22A