IL_8Y0U_068

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

UGAAU*AGGAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y0U_068 not in the Motif Atlas

Homologous match to IL_8C3A_073

Geometric discrepancy: 0.1083

The information below is about IL_8C3A_073

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

8Y0U|1|C1|U|1645
8Y0U|1|C1|G|1646
8Y0U|1|C1|A|1647
8Y0U|1|C1|A|1648
8Y0U|1|C1|U|1649
*
8Y0U|1|C1|A|1806
8Y0U|1|C1|G|1807
8Y0U|1|C1|G|1808
8Y0U|1|C1|A|1809
8Y0U|1|C1|A|1810

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LA

Large ribosomal subunit protein uL2A

Chain LZ

Large ribosomal subunit protein eL27A

Chain Lg

Large ribosomal subunit protein eL34A