IL_8Y0U_083

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

CGAUGG*UGUUGACG

Length

14 nucleotides

Bulged bases

8Y0U|1|C1|U|2159, 8Y0U|1|C1|U|2175, 8Y0U|1|C1|C|2179

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y0U_083 not in the Motif Atlas

Homologous match to IL_8C3A_088

Geometric discrepancy: 0.1058

The information below is about IL_8C3A_088

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_64509.1

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

2

Unit IDs

8Y0U|1|C1|C|2156
8Y0U|1|C1|G|2157
8Y0U|1|C1|A|2158
8Y0U|1|C1|U|2159
8Y0U|1|C1|G|2160
8Y0U|1|C1|G|2161
*
8Y0U|1|C1|U|2173
8Y0U|1|C1|G|2174
8Y0U|1|C1|U|2175
8Y0U|1|C1|U|2176
8Y0U|1|C1|G|2177
8Y0U|1|C1|A|2178
8Y0U|1|C1|C|2179
8Y0U|1|C1|G|2180

Current chains

Chain C1

25S rRNA

Nearby chains

Chain C2

Small subunit ribosomal RNA; SSU rRNA

Chain LA

Large ribosomal subunit protein uL2A

Chain Lp

Large ribosomal subunit protein eL43A