IL_8Y0U_119

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

UAAUU*ACCA

Length

9 nucleotides

Bulged bases

8Y0U|1|C1|C|3092

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y0U_119 not in the Motif Atlas

Homologous match to IL_8C3A_126

Geometric discrepancy: 0.146

The information below is about IL_8C3A_126

Detailed Annotation

Major groove minor groove platform with tHH

Broad Annotation

Major groove minor groove platform with tHH

Motif group

IL_14592.1

Basepair signature

cWW-tHH-cWW-L-L

Number of instances in this motif group

4

Unit IDs

8Y0U|1|C1|U|3047
8Y0U|1|C1|A|3048
8Y0U|1|C1|A|3049
8Y0U|1|C1|U|3050
8Y0U|1|C1|U|3051
*
8Y0U|1|C1|A|3091
8Y0U|1|C1|C|3092
8Y0U|1|C1|C|3093
8Y0U|1|C1|A|3094

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LV

Large ribosomal subunit protein uL14A

Chain LW

Large ribosomal subunit protein eL24A