IL_8Y0U_172

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

GUGCCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

8Y0U|1|C2|A|579, 8Y0U|1|C2|U|581, 8Y0U|1|C2|U|582

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y0U_172 not in the Motif Atlas

Homologous match to IL_4V88_415

Geometric discrepancy: 0.1358

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

8Y0U|1|C2|G|562
8Y0U|1|C2|U|563
8Y0U|1|C2|G|564
8Y0U|1|C2|C|565
8Y0U|1|C2|C|566
8Y0U|1|C2|A|567
8Y0U|1|C2|G|568
*
8Y0U|1|C2|C|575
8Y0U|1|C2|G|576
8Y0U|1|C2|G|577
8Y0U|1|C2|U|578
8Y0U|1|C2|A|579
8Y0U|1|C2|A|580
8Y0U|1|C2|U|581
8Y0U|1|C2|U|582
8Y0U|1|C2|C|583

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SX

40S ribosomal protein S23-A

Chain Se

40S ribosomal protein S30-A