IL_8Y0U_197

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

ACCA*UCCCU

Length

9 nucleotides

Bulged bases

8Y0U|1|C2|C|1158, 8Y0U|1|C2|C|1159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y0U_197 not in the Motif Atlas

Homologous match to IL_8C3A_449

Geometric discrepancy: 0.1588

The information below is about IL_8C3A_449

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.10

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

16

Unit IDs

8Y0U|1|C2|A|1157
8Y0U|1|C2|C|1158
8Y0U|1|C2|C|1159
8Y0U|1|C2|A|1160
*
8Y0U|1|C2|U|1617
8Y0U|1|C2|C|1618
8Y0U|1|C2|C|1619
8Y0U|1|C2|C|1620
8Y0U|1|C2|U|1621

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SQ

Small ribosomal subunit protein uS9A

Chain Sc

Small ribosomal subunit protein eS28A