IL_8Y0U_246

3D structure

PDB id

8Y0U (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with STM1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

UUCCGG*UUGA

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y0U_246 not in the Motif Atlas

Geometric match to IL_5EW4_002

Geometric discrepancy: 0.3859

The information below is about IL_5EW4_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

8Y0U|1|C1|U|1014
8Y0U|1|C1|U|1015
8Y0U|1|C1|C|1016
8Y0U|1|C1|C|1017
8Y0U|1|C1|G|1018
8Y0U|1|C1|G|1019
*
8Y0U|1|C1|U|1033
8Y0U|1|C1|U|1034
8Y0U|1|C1|G|1035
8Y0U|1|C1|A|1036

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LJ

Large ribosomal subunit protein uL5B

Chain s

Suppressor protein STM1