IL_8Y0W_038

3D structure

PDB id

8Y0W (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with eIF5A, eEF2 and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

8Y0W|1|L5|G|748, 8Y0W|1|L5|C|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y0W_038 not in the Motif Atlas

Geometric match to IL_5TBW_020

Geometric discrepancy: 0.1843

The information below is about IL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8Y0W|1|L5|G|745
8Y0W|1|L5|A|746
8Y0W|1|L5|A|747
8Y0W|1|L5|G|748
8Y0W|1|L5|G|749
8Y0W|1|L5|U|750
8Y0W|1|L5|G|751
8Y0W|1|L5|G|752
*
8Y0W|1|L5|U|911
8Y0W|1|L5|G|912
8Y0W|1|L5|U|913
8Y0W|1|L5|U|914
8Y0W|1|L5|A|915
8Y0W|1|L5|C|916
8Y0W|1|L5|A|917
8Y0W|1|L5|G|918
8Y0W|1|L5|C|919

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LM

60S ribosomal protein L14

Chain LS

60S ribosomal protein L18a