IL_8Y0W_088

3D structure

PDB id

8Y0W (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with eIF5A, eEF2 and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UAUAGACAG*CCGAA

Length

14 nucleotides

Bulged bases

8Y0W|1|L5|A|1960

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y0W_088 not in the Motif Atlas

Homologous match to IL_8C3A_057

Geometric discrepancy: 0.21

The information below is about IL_8C3A_057

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90538.5

Basepair signature

cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L

Number of instances in this motif group

6

Unit IDs

8Y0W|1|L5|U|1957
8Y0W|1|L5|A|1958
8Y0W|1|L5|U|1959
8Y0W|1|L5|A|1960
8Y0W|1|L5|G|1961
8Y0W|1|L5|A|1962
8Y0W|1|L5|C|1963
8Y0W|1|L5|A|1964
8Y0W|1|L5|G|1965
*
8Y0W|1|L5|C|2022
8Y0W|1|L5|C|2023
8Y0W|1|L5|G|2024
8Y0W|1|L5|A|2025
8Y0W|1|L5|A|2026

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Lm

Ubiquitin-60S ribosomal protein L40