IL_8Y0W_219
3D structure
- PDB id
- 8Y0W (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- dormant ribosome with eIF5A, eEF2 and SERBP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUUC
- Length
- 16 nucleotides
- Bulged bases
- 8Y0W|1|S2|A|628, 8Y0W|1|S2|U|630, 8Y0W|1|S2|U|631
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8Y0W_219 not in the Motif Atlas
- Homologous match to IL_8C3A_425
- Geometric discrepancy: 0.1397
- The information below is about IL_8C3A_425
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.2
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
8Y0W|1|S2|G|611
8Y0W|1|S2|U|612
8Y0W|1|S2|G|613
8Y0W|1|S2|C|614
8Y0W|1|S2|C|615
8Y0W|1|S2|A|616
8Y0W|1|S2|G|617
*
8Y0W|1|S2|C|624
8Y0W|1|S2|G|625
8Y0W|1|S2|G|626
8Y0W|1|S2|U|627
8Y0W|1|S2|A|628
8Y0W|1|S2|A|629
8Y0W|1|S2|U|630
8Y0W|1|S2|U|631
8Y0W|1|S2|C|632
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain CB
- Elongation factor 2
- Chain S
- Isoform 2 of SERPINE1 mRNA-binding protein 1
- Chain SD
- 40S ribosomal protein S3
- Chain SX
- 40S ribosomal protein S23
- Chain Se
- 40S ribosomal protein S30
Coloring options: