IL_8Y0W_247

3D structure

PDB id

8Y0W (explore in PDB, NAKB, or RNA 3D Hub)

Description

dormant ribosome with eIF5A, eEF2 and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

ACCA*UCCCU

Length

9 nucleotides

Bulged bases

8Y0W|1|S2|C|1215, 8Y0W|1|S2|C|1216

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y0W_247 not in the Motif Atlas

Homologous match to IL_8C3A_449

Geometric discrepancy: 0.0935

The information below is about IL_8C3A_449

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.10

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

16

Unit IDs

8Y0W|1|S2|A|1214
8Y0W|1|S2|C|1215
8Y0W|1|S2|C|1216
8Y0W|1|S2|A|1217
*
8Y0W|1|S2|U|1681
8Y0W|1|S2|C|1682
8Y0W|1|S2|C|1683
8Y0W|1|S2|C|1684
8Y0W|1|S2|U|1685

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SF

40S ribosomal protein S5

Chain SQ

40S ribosomal protein S16

Chain Sc

40S ribosomal protein S28