IL_8Y0X_032

3D structure

PDB id

8Y0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dormant ribosome with SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCG*CGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CCG,CGG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y0X_032 not in the Motif Atlas

Geometric match to IL_5Z1I_002

Geometric discrepancy: 0.3893

The information below is about IL_5Z1I_002

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_31737.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

8Y0X|1|L5|C|516
8Y0X|1|L5|C|517
8Y0X|1|L5|G|518
*
8Y0X|1|L5|C|643
8Y0X|1|L5|G|644
8Y0X|1|L5|G|645

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LL

60S ribosomal protein L13