IL_8Y0X_039

3D structure

PDB id

8Y0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dormant ribosome with SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

8Y0X|1|L5|G|748, 8Y0X|1|L5|C|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Y0X_039 not in the Motif Atlas

Geometric match to IL_5TBW_020

Geometric discrepancy: 0.184

The information below is about IL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8Y0X|1|L5|G|745
8Y0X|1|L5|A|746
8Y0X|1|L5|A|747
8Y0X|1|L5|G|748
8Y0X|1|L5|G|749
8Y0X|1|L5|U|750
8Y0X|1|L5|G|751
8Y0X|1|L5|G|752
*
8Y0X|1|L5|U|911
8Y0X|1|L5|G|912
8Y0X|1|L5|U|913
8Y0X|1|L5|U|914
8Y0X|1|L5|A|915
8Y0X|1|L5|C|916
8Y0X|1|L5|A|917
8Y0X|1|L5|G|918
8Y0X|1|L5|C|919

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LM

60S ribosomal protein L14

Chain LS

60S ribosomal protein L18a